|
|
1.
Bailey, J., and D. Ollis. 1986. Biochemical engineering
fundamentals. McGraw-Hill Book Co., New York, N.Y.
2. Brown, S. M., M. L.
Howell, M. L. Vasil, A. J. Anderson, and D. J. Hassett.
1995. Cloning and characterization of the katB gene of Pseudomonas aeruginosa encoding a hydrogen peroxide-inducible
catalase: purification of KatB, cellular localization, and
demonstration that it is essential for optimal resistance to
hydrogen peroxide. J. Bacteriol. 177:6536-6544. [Abstract]
3. Costerton, J.
W., Z. Lewandowski, D. de Beer, D. Caldwell, D. Korber, and G.
James. 1994. Biofilms, the customized microniche. J. Bacteriol. 176:2137-2142. [Medline]
4. Cussler, E. L. 1984.
Diffusion - mass transfer in fluid systems. Cambridge
University Press, Cambridge, United Kingdom.
5.
Davies, D. G., M. R. Parsek, J. P. Pearson, B. H. Iglewski,
J. W. Costerton, and E. P. Greenberg. 1998.
The involvement of cell-to-cell signals in the development of a
bacterial biofilm. Science 280:295-298. [Abstract/Free
Full Text]
6.
de Beer, D., R. Srinivasan, and P. S. Stewart. 1994. Direct measurement of chlorine
penetration into biofilms during disinfection. Appl. Environ.
Microbiol. 60:4339-4344.[Abstract]
7. de
Beer, D., P. Stoodley, and Z. Lewandowski.
1997. Measurements of local diffusion coefficients in biofilms by
microinjection and confocal microscopy. Biotechnol. Bioeng. 53:151-158. [CrossRef]
8. de
Beer, D., P. Stoodley, F. Roe, and Z. Lewandowski.
1994. Effects of biofilm structure on oxygen distribution and mass
transport. Biotechnol. Bioeng. 43:1131-1138.
9.
Dockery, J. D., and J. P. Keener. 2001.
A mathematical model for quorum sensing in Pseudomonas
aeruginosa. Bull. Math. Biol. 63:95-116.[CrossRef] [Medline]
10. Han,
P., and D. M. Bartels. 1996. Temperature
dependence of oxygen diffusion in H2O and D2O.
J. Phys. Chem. 100:5597-5602. [CrossRef]
11.
Harmsen, H. J. M., H. M. P. Kengen, A. D. L. Akkermans, A. J. M.
Stams, and W. M. de Vos. 1996. Detection
and localization of syntrophic propionate-oxidizing bacteria in
granular sludge by in situ hybridization using 16S rRNA-based
oligonucleotide probes. Appl. Environ. Microbiol. 62:1656-1663. [Abstract]
12.
Hermanowicz, S. W. 2001. A simple 2D
biofilm model yields a variety of morphological features. Math. Biosci. 169:1-14. [CrossRef] [Medline]
13.
Horvath, A. L. 1985. Handbook of aqueous
electrolyte solutions: physical properties, estimation and
correlation methods. John Wiley & Sons, Inc., New York, N.Y.
14.
Jackson, D. W., K. Suzuki, L. Oakford, J. W. Simecka, M. E. Hart,
and T. Romeo. 2002. Biofilm formation
and dispersal under the influence of the global regulator CsrA of
Escherichia coli. J. Bacteriol. 184:290-301. [Abstract/Free
Full Text]
15. Kreft,
J.-U., C. Picioreanu, J. W. T. Wimpenny, and M. C. M. van
Loosdrecht. 2001. Individual-based
modeling of biofilms. Microbiology 147:2897-2912. [Abstract/Free
Full Text]
16.
Longsworth, L. G. 1955. Diffusion in
liquids and the Stokes-Einstein relation, p. 225-247. In T.
Shedlovsky (ed.), Electrochemistry in biology and medicine. John
Wiley & Sons, Inc., New York, N.Y.
17.
MacLeod, F. A., S. R. Guiot, and J. W. Costerton.
1990. Layered structure of bacterial aggregates produced in an
upflow anaerobic sludge bed and filter reactor. Appl. Environ.
Microbiol. 56:1598-1607. [Medline]
18. Mason,
C. M., and J. B. Culvern. 1949.
Electrical conductivity of orthophosphoric acid and of sodium and
potassium dihydrogen phosphates at 25°C. J. Am. Chem. Soc. 71:2387-2393.
19. Okabe,
S., T. Itoh, H. Satoh, and Y. Watanabe.
1999. Analyses of spatial distributions of sulfate-reducing
bacteria and their activity in aerobic wastewater biofilms. Appl.
Environ. Microbiol. 65:5107-5116. [Abstract/Free
Full Text]
20. Okabe,
S., H. Satoh, and Y. Watanabe. 1999. In
situ analysis of nitrifying biofilms as determined by in situ
hybridization and the use of microelectrodes. Appl. Environ.
Microbiol. 65:3182-3191. [Abstract/Free
Full Text]
21.
O'Toole, G. A., K. A. Givvs, P. W. Hager, P. V. Phibbs, Jr., and
R. Kolter. 2000. The global carbon
metabolism regulator Crc is a component of a signal transduction
pathway required for biofilm development by Pseudomonas
aeruginosa. J. Bacteriol. 182:425-431. [Abstract/Free
Full Text]
22. Perry,
R. H., and C. H. Chilton. 1973. Chemical
engineers' handbook, 5th ed. McGraw-Hill Book Co., New York, N.Y.
23.
Picioreanu, C., M. C. M. van Loosdrecht, and J. J. Heijnen.
1998. Mathematical modeling of biofilm structure with a hybrid differential-discrete cellular automaton approach.
Biotechnol.
Bioeng. 58:101-116. [CrossRef] [Medline]
24. Ramsing, N. B., M. Kuhl, and B. B. Jorgensen.
1993. Distribution of sulfate-reducing bacteria, O2,
and H2S in photosynthetic biofilms determined by oligonucleotide probes and microelectrodes. Appl.
Environ. Microbiol. 59:3840-3849. [Abstract]
25. Redfield, R. J. 2002. Is
quorum sensing a side effect of diffusion sensing? Trends Microbiol. 10:365-370. [CrossRef] [Medline]
26. Robinson, R. A., and R. H. Stokes.
1959. Electrolyte solutions. Academic Press, Ltd., London,
England.
27. Santegoeds, C. M., T. G. Ferdelman, G. Muyzer, and D. de Beer.
1998. Structural and functional dynamics of sulfate-reducing populations in bacterial biofilms.
Appl. Environ. Microbiol.
64:3731-3739. [Abstract/Free
Full Text]
28. Sauer, K., A. K. Camper, G. D. Ehrlich, J. W. Costerton, and D. G.
Davies. 2002. Pseudomonas aeruginosa displays multiple phenotypes during
development as a biofilm. J. Bacteriol. 184:1154.
29. Schramm, A., L. H. Larsen, N. P. Revsbech, N. B. Ramsing, R. Amann,
and K.-H. Schleifer.
1996. Structure and function of a nitrifying biofilm as determined
by in situ hybidization and the use of microelectrodes. Appl.
Environ. Microbiol. 62:4641-4647. [Abstract]
30. Sivakanesan, R., and E. A. Dawes.
2000. Anaerobic glucose and serine metabolism in Staphylococcus
epidermidis. J. Gen. Microbiol. 118:143-157.
31. Sternberg, C., B. B. Christensen, T. Johansen, A. T. Nielsen, J. B.
Andersen, M. Givskov, and S. Molin. 1999. Distribution of bacterial growth activity in flow-chamber
biofilms. Appl. Environ. Microbiol. 65:4108-4117. [Abstract/Free
Full Text]
32. Stewart, P. S. 1996.
Theoretical aspects of antibiotic diffusion into microbial
biofilms. Antimicrob. Agents Chemother. 40:2517-2522. [Abstract]
33. Stewart, P. S. 1998. A
review of experimental measurements of effective diffusive
permeabilities and effective diffusion coefficients in biofilms.
Biotechnol. Bioeng. 59:261-272. [CrossRef] [Medline]
34. Stewart, P. S., G. A. McFeters, and C.-T. Huang.
2000. Biofilm control by antimicrobial agents, p. 373-405. In
J. D. Bryers (ed.), Biofilms, 2nd ed. John Wiley & Sons, Inc., New
York, N.Y.
35. Stewart, P. S., Rayner, J., Roe, F., and W. M. Rees.
2001. Biofilm penetration and disinfection efficacy of alkaline
hypochlorite and chlorosulfamates. J. Appl. Microbiol. 91:525-532. [CrossRef] [Medline]
36. Stoodley, P., D. de Beer, and Z. Lewandowski.
1994. Liquid flow in biofilm systems. Appl. Environ. Microbiol.
60:2711-2716. [Abstract]
37. Walters, M. C., F. Roe, A. Bugnicourt, M. J. Franklin, and P. S.
Stewart. Contributions
of antibiotic penetration, oxygen limitation, and low metabolic
activity to the tolerance of Pseudomonas aeruginosa
biofilms to ciprofloxacin and tobramycin. Antimicrob. Agents Chemother., in press.
38. Wentland, E. J., P. S. Stewart, C.-T. Huang, and G. A. McFeters.
1996. Spatial variations in growth rate within Klebsiella pneumoniae colonies and biofilm.
Biotechnol. Prog. 12:316-321. [CrossRef] [Medline]
39. Whiteley, M., M. G. Bangera, R. E. Bumgarner, M. R. Parsek, G. M.
Teitzel, S. Lory, and E. P. Greenberg. 2001. Gene expression in
Pseudomonas aeruginosa biofilms.
Nature 413:860-864. [CrossRef] [Medline]
40. Wood, B. D., M. Quintard, and S. Whitaker.
2002. Calculation of effective diffusivities for biofilms and
tissues. Biotechnol. Bioeng. 77:495-516. [CrossRef] [Medline]
41. Xu, K. D., M. J. Franklin, C.-H. Park, G. A. McFeters, and P. S.
Stewart. 2001. Gene
expression and protein levels of the stationary phase sigma
factor, RpoS, in continuously fed Pseudomonas aeruginosa
biofilms. FEMS Microbiol. Lett. 199:67-71. [CrossRef] [Medline]
42. Xu, K. D., P. S. Stewart, F. Xia, C.-T. Huang, and G. A. McFeters.
1998. Spatial physiological heterogeneity in Pseudomonas aeruginosa biofilm is determined by oxygen availability.
Appl.
Environ. Microbiol. 64:4035-4039. [Abstract/Free
Full Text]
43. Stewart,
P.S. 2003. Diffusion in biofilms. J. Bacteriol. 185(5):
1485-1491.
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