Representative Publications

Elias, D.A., E.C. Drury, A.M. Redding, A. Mukhopadyay, H.-C. B.Yen, M.W. Fields, T.C. Hazen, A.P. Arkin, J.D. Keasling, and J.D. Wall. 2009. Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation. Nucleic Acids Res. (accepted)

Hwang, C., W. Wu, T.J. Gentry, J. Carley, G.A. Corbin, S.L. Carroll, D.B. Watson, P.M. Jardine, J. Zhou, C.S. Criddle, and M.W. Fields. 2009. Bacterial community succession during in situ uranium bioremediation: spatial similarities along controlled flow paths. Nature ISME J. 3:47–64.

Wu, L., X. Liu, M.W. Fields, D.K. Thompson, C.E. Bagwell, J.M. Tiedje, T.C. Hazen, and J. Zhou. 2008. Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness. Nature ISME J. 2:1-14.

Klonowska, A., M.E. Clark, S.B. Thieman, B.J. Giles, J.D. Wall and M.W. Fields. 2008. Hexavalent chromium reduction in Desulfovibrio vulgaris Hildenborough causes transitory inhibition of sulfate reduction and cell growth. Appl. Microbiol. Biotechnol. 78:1007-1016.
 

Clark, M.E., R.E. Edelmann, M.L. Duley, J.D. Wall, and M.W. Fields. 2007. Biofilm formation in Desulfovibrio vulgaris Hildenborough is dependent upon protein filaments. Environ. Microbiol. 9(11):2844-2854.

Clark, M.E., Q. He, Z. He, E.J. Alm, K.H. Huang, T.C. Hazen, A.P. Arkin, J.D. Wall, J. Zhou, and M.W. Fields. 2006. Temporal transcriptomic analyses of Desulfovibrio vulgaris Hildenborough during electron donor depletion. Appl. Environ. Microbiol. 72:5578-5588.

He, Q., K.H. Huang, Z. He, E.J. Alm, M.W. Fields, T.C. Hazen, A.P. Arkin, J.D. Wall, and J. Zhou. 2006. Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough inferred from global transcriptional analysis. Appl. Environ. Microbiol. 72:4370-438.

Gao, W., Y. Liu, C.S. Giometti, S.L. Tollaksen, T. Khare, L. Wu, D.M. Klingeman, M.W. Fields and J. Zhou. 2006. Knock-out of a prohibitin-like protein results in alteration of iron metabolism, increased spontaneous mutation and hydrogen peroxide sensitivity in the bacterium Shewanella oneidensis. BMC Genomics 7:76.

Wu, W. et al. 2006. Field-scale bioremedation of uranium in a highly contaminated aquifer II: reduction of U(VI) and geochemical control of U(VI) bioavailability. Environ. Sci. Technol. 40:3986-3995.

Fields, M.W., C.E. Bagwell, S.L. Carroll, T. Yan, X. Liu, D.B. Watson, P.M. Jardine, C.S.Criddle, T.C. Hazen, and J. Zhou. 2006. Phylogenetic and functional biomakers as indicators of bacterial community responses to mixed-waste contamination. Environ. Sci. Technol. 40:2601-2607.

Hwang, C., W.-M.Wu, T.J. Gentry, J. Carley, S.L. Carroll, C. Schadt, D. Watson, P.M. Jardine, J. Zhou, R.F. Hickey, C.S. Criddle, and M.W. Fields. 2006. Changes in bacterial community structure correlate with initial operating conditions of a field-scale denitrifying fluidized bed reactor. Appl. Microbiol. Biotech. 71:748-760.

Fields, M.W., J. Schryver, C.C. Brandt, T. Yan, J. Zhou, and A.V. Palumbo. 2006. Confidence intervals for similarity values achieved from direct sequence determination of cloned SSU rRNA genes from environmental samples. J. Microbiol. Methods 65(1):144-152.

Dong, H., H. Jiang, G. Zhang, B. Yu, L.R. Chapman, C.R. Lucas, and M.W. Fields. 2006. Microbial diversity in water and sediment of Lake Qinghai: the largest inland saline lake in China. Microbial Ecol. 51:65-82.

He, Z., L. Wu, M.W. Fields and J. Zhou. 2005. Comparison of microarrays with different probe sizes for monitoring gene expression. Appl. Environ. Microbiol. 71:5154-5162.

Fields, M.W., T. Yan, S.-K. Rhee, S.L. Carroll, P.M. Jardine, D.B. Watson, C.S. Criddle and J. Zhou. 2005. Impacts on microbial communities and cultivable isolates from groundwater contaminated with high levels of nitric acid-uranium waste. FEMS Microbiol. Ecol. 53:417-428
 

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For more information, email Matthew Fields

08 April, 2009